Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA2808Conserved hypothetical protein. (377 aa)    
Predicted Functional Partners:
RPA4581
Conserved hypothetical protein.
 
   
 0.718
RPA3420
Conserved unknown protein.
  
     0.678
RPA0536
Acyltransferase 3 family.
  
     0.676
RPA1508
Conserved hypothetical protein.
  
     0.669
RPA3957
Hpt domain.
  
     0.664
RPA2752
Possible succinoglycan biosynthesis transport protein exoP.
 
   
 0.644
RPA4785
Polysaccharide deacetylase.
 
   
 0.632
RPA3418
Conserved hypothetical protein.
  
    0.630
RPA4589
Possible membrane protein involved in export of O-antigen.
 
  
 0.616
RPA1634
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.614
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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