Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPA2923Conserved hypothetical protein; InterPro IPR000694. (829 aa)    
Predicted Functional Partners:
RPA1062
Conserved hypothetical protein; COGs COG0477.
  
     0.724
RPA3359
O-antigen polymerase.
 
     0.581
RPA0391
Possible alkaline phosphatase; Belongs to the alkaline phosphatase family.
  
    0.573
RPA2929
Conserved hypothetical protein.
  
     0.492
RPA4171
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.490
dnaE
DNA polymerase III alpha subunit.
       0.485
RPA3262
Putative transporter.
  
     0.455
rpsB
30S ribosomal protein S2; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the universal ribosomal protein uS2 family.
       0.439
RPA0630
DUF423.
  
     0.438
RPA2027
ATPase:Protein of unknown function DUF87.
  
     0.422
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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