Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mexPossible RND efflux membrane fusion protein precursor; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (414 aa)    
Predicted Functional Partners:
mexF
Putative RND multidrug efflux transporter MexF; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.950
RPA0096
Putative multidrug-efflux transport protein.
 
 
 0.850
RPA4095
Putative multidrug-efflux transport protein mexF.
 
 
 0.847
mexD2
RND multidrug efflux transporter MexD.
 
 
 0.844
mexD2-2
RND multidrug efflux transporter MexD.
 
 
 0.844
mexD3
RND multidrug efflux transporter MexD; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.843
mexB
RND multidrug efflux transporter MexB.
 
 
 0.839
RPA2572
Possible outer membrane efflux protein.
 
 
 0.762
oprN
Putative outer membrane efflux protein OprN precursor.
 
 
 0.759
RPA2373
Possible outer membrane protein.
 
 
 0.730
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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