bioA protein (Rhodopseudomonas palustris CGA009)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

bioA

Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (425 aa)

Predicted Functional Partners:

bioD

0.999

bioF

0.998

bioB

0.994

thiD

0.792

thiE

0.764

hemA

0.755

hemO

0.750

RPA2614

0.742

sdhA

0.514

RPA2973

0.485

Your Current Organism:

Rhodopseudomonas palustris CGA009

NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPA2614	bioA	RPA2614	RPA2970	Conserved hypothetical protein.	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.742
RPA2614	bioD	RPA2614	RPA2971	Conserved hypothetical protein.	Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.	0.881
RPA2614	bioF	RPA2614	RPA2972	Conserved hypothetical protein.	8-amino-7-oxononanoate synthase.	0.640
RPA2614	hemA	RPA2614	RPA1554	Conserved hypothetical protein.	5-aminolevulinic acid synthase (ALAS); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.640
RPA2614	hemO	RPA2614	RPA0854	Conserved hypothetical protein.	5-aminolevulinic acid synthase (ALAS); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.640
RPA2973	bioA	RPA2973	RPA2970	Hypothetical protein.	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.485
RPA2973	bioD	RPA2973	RPA2971	Hypothetical protein.	Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.	0.485
RPA2973	bioF	RPA2973	RPA2972	Hypothetical protein.	8-amino-7-oxononanoate synthase.	0.485
bioA	RPA2614	RPA2970	RPA2614	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Conserved hypothetical protein.	0.742
bioA	RPA2973	RPA2970	RPA2973	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Hypothetical protein.	0.485
bioA	bioB	RPA2970	RPA2045	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Biotin synthetase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.	0.994
bioA	bioD	RPA2970	RPA2971	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.	0.999
bioA	bioF	RPA2970	RPA2972	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	8-amino-7-oxononanoate synthase.	0.998
bioA	hemA	RPA2970	RPA1554	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	5-aminolevulinic acid synthase (ALAS); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.755
bioA	hemO	RPA2970	RPA0854	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	5-aminolevulinic acid synthase (ALAS); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.750
bioA	sdhA	RPA2970	RPA0217	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Succinate dehydrogenase flavoprotein subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.	0.514
bioA	thiD	RPA2970	RPA3971	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Phosphomethylpyrimidine kinase (hmp-phosphate kinase); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.792
bioA	thiE	RPA2970	RPA3576	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Thiamin phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP).	0.764
bioB	bioA	RPA2045	RPA2970	Biotin synthetase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.994
bioB	bioD	RPA2045	RPA2971	Biotin synthetase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.	Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.	0.998

page 1 of 3

Server load: medium (48%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Co-occurrence

Experiments

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About