Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPA2976Permeases of the drug/metabolite transporter (DMT) superfamily. (299 aa)    
Predicted Functional Partners:
RPA0810
Permeases of the drug/metabolite transporter (DMT) superfamily.
  
     0.632
serA1
Putative phosphoglycerate dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
   
   0.568
RPA2234
Conserved hypothetical protein.
   
    0.457
RPA4763
Possible cation efflux pump.
  
 
 0.447
flgF
Putative flagellar basal-body rod protein flgF; Belongs to the flagella basal body rod proteins family.
    
 
 0.412
matE3
Probable cation efflux pump (multidrug resistance protein).
  
 
 0.407
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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