STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA2986Probable 5-carboxymethyl-2-hydroxymuconate delta isomerase. (114 aa)    
Predicted Functional Partners:
hpcC
5-carboxy-2-hydroxymuconate semialdehyde dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the aldehyde dehydrogenase family.
  
 
 0.910
hpcD
Putative 5-carboxymethyl-2-hydroxymuconate isomerase.
   
 
  0.900
ligC
4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 
  0.900
hpaD
Putative 3,4-dihydroxyphenylacetate 2,3-dioxygenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.855
hpcG
2-oxo-hepta-3-ene-1,7-dioate hydratase.
  
  
 0.737
hpcH
Putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.707
RPA4050
Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.606
RPA2987
Conserved hypothetical protein; InterPro IPR000379 COGs COG0657.
  
    0.500
RPA4286
Catalytic LigB subunit of aromatic ring-opening dioxygenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.421
ligA
Protocatechuate 4,5-dioxygenase, alpha chain.
  
  
 0.421
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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