Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA2996Conserved hypothetical protein; COGs COG3002; Belongs to the UPF0753 family. (808 aa)    
Predicted Functional Partners:
nuoL3
Possible NADH-Ubiquinone/plastoquinone (complex I).
 
 0.998
RPA2994
Transcriptional regulator, LysR family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the LysR transcriptional regulatory family.
 
    0.886
nuoL1
NADH-ubiquinone dehydrogenase chain L.
  
 
 0.861
phaA
pH adaptation potassium efflux system components phaA and phaB; Citation: Putkorny et al. (1998) Mol. Microbiol. 28:1091-1101.
  
 
 0.751
nuoL2
NADH-ubiquinone dehydrogenase chain L.
  
 
 0.748
RPA1830
Hypothetical protein.
 
    0.623
RPA0232
Putative carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
  
    0.566
RPA0799
Putative carbonic anhydrase.
  
    0.566
RPA1831
Conserved hypothetical protein; COGs COG0288.
  
    0.566
dapA1-2
Putative dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
  
    0.483
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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