Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
pucAcPseudo light-harvesting protein. (212 aa)    
Predicted Functional Partners:
pucAd
Light-harvesting protein B-800-850 alpha chain D; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
  
 0.862
pucBd
Light-harvesting protein B-800-850 beta chain D; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
     
 0.846
RPA3587
Hypothetical protein.
   
  
 0.748
RPA3014
Two-component transcriptional regulator, LuxR family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
      
 0.741
RPA3035
Hypothetical protein.
      
 0.741
pucBc
Light-harvesting protein B-800-850 beta chain C; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
      
 0.723
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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