Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pucAdLight-harvesting protein B-800-850 alpha chain D; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (59 aa)    
Predicted Functional Partners:
pucBd
Light-harvesting protein B-800-850 beta chain D; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
 0.999
pucBc
Light-harvesting protein B-800-850 beta chain C; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
 0.984
pucBa
Light-harvesting protein B-800-850 beta chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
 0.960
pucBe
Light-harvesting protein B-800-850 beta chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
 0.959
pucAb
Light-harvesting protein B-800-850 alpha chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
     
0.903
pucAa
Light-harvesting protein B-800-850 alpha chain A; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
     
0.901
pucAe
Light-harvesting protein B-800-850 alpha chain E; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
     
 
0.900
pucAc
Pseudo light-harvesting protein.
  
  
 0.862
RPA3587
Hypothetical protein.
   
  
 0.746
RPA3035
Hypothetical protein.
      
 0.740
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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