Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA3079Hypothetical protein. (316 aa)    
Predicted Functional Partners:
RPL9
Putative 50S ribosomal protein L9, cultivar specific nodulation protein Csn1; Binds to the 23S rRNA; Belongs to the bacterial ribosomal protein bL9 family.
  
    0.782
RPA0249
Hypothetical protein; InterPro IPR000104:IPR000694.
  
     0.737
RPA4486
Conserved hypothetical protein.
  
     0.681
RPA4435
Hypothetical protein.
  
    0.679
RPS6
Possible 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. Belongs to the bacterial ribosomal protein bS6 family.
  
    0.645
RPA4768
Conserved hypothetical protein.
  
     0.634
RPA0842
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.631
RPS18
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit.
  
    0.630
RPA0078
Protein of unknown function UPF0079; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.600
RPA3421
Conserved hypothetical protein; COGs COG3672.
  
     0.597
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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