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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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RPA3093Possible urea/short-chain binding protein of ABC transporter; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (408 aa)    
Predicted Functional Partners:
RPA2278
Possible ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.876
RPA2277
Possible ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.864
RPA2275
Putative branched-chain amino acid transport system ATP-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.861
RPA2276
Putative branched-chain amino acid transport system ATP-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.850
hbaG
Putative ABC transporter subunit, membrane spanning domain + ATP-binding component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.672
RPA1566
Possible branched-chain amino acid transport system ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.664
RPA1792
Putative branched-chain amino acid transport system ATP-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.612
RPA3092
Putative oxidoreductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
   0.596
RPA4036
Possible branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.499
RPA4027
Possible branched-chain amino acid ABC transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.485
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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