Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA3101Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (161 aa)    
Predicted Functional Partners:
RPA3751
Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.695
RPA0746
Possible deca-heme c-type cytochrome; Shewanella putrefaciens homolog is involved in metal reduction. Homology is only in C-terminal 60% of predicted protein.
  
     0.600
RPA2346
Hypothetical protein; InterPro IPR006311.
  
    0.532
RPA3102
Conserved hypothetical protein; InterPro IPR006597.
       0.523
RPA3088
Conserved hypothetical protein; COGs COG0327.
  
     0.483
RPA1017
Nitrogen fixation-related protein.
  
     0.478
RPA1389
Conserved hypothetical protein; InterPro IPR000276 COGs COG1840.
  
    0.433
gctA
Possible glutaconate CoA-transferase, subunit A.
  
     0.432
RPA1928
Ferredoxin-like protein [2Fe-2S]; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.415
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.