Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA3105Patatin-like phospholipase domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (461 aa)    
Predicted Functional Partners:
gatB
Glu-tRNA(Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
       0.707
RPA4435
Hypothetical protein.
 
     0.689
RPA1581
Hypothetical protein.
  
     0.514
RPA0642
Conserved hypothetical protein.
  
     0.501
RPA3567
Conserved hypothetical protein.
  
     0.490
RPA3106
Putative signal transduction histidine kinase with PAS/PAC domain.
       0.484
flgL
Possible flagellin and hook associated protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
 
 
 0.481
GatA2
Glu-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
       0.472
RPA1154
Conserved hypothetical protein.
  
     0.470
RPA2346
Hypothetical protein; InterPro IPR006311.
 
     0.462
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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