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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA3121Putative alginate o-acetyltransferase AlgI; Belongs to the membrane-bound acyltransferase family. (470 aa)    
Predicted Functional Partners:
RPA3122
Hypothetical protein.
  
    0.791
RPA2578
Possible alginate o-acetyltransferase AlgJ.
 
    0.787
mcyE
Possible McyE polykeitde synthase and peptide synthetase (AF183408).
 
  
 0.708
RPA3340
Peptide synthetase (fragment).
 
  
 0.670
RPA3338
Possible Condensation domain, peptide synthetase.
 
  
 0.664
RPA2022
Specialized acyl carrier protein.
  
 
 0.648
RPA4599
Conserved hypothetical protein; InterPro IPR006163.
  
 
 0.647
RPA2387
Conserved hypothetical protein.
  
 
 0.645
acpP
Constitutive acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.645
manC,
Putative mannose-1-phosphate guanylyltransferase (GDP) (GDP-mannose pyrophosphorylase) (GMP); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.591
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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