Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA3130Transcriptional regulator, XRE family. (127 aa)    
Predicted Functional Partners:
RPA3131
Conserved hypothetical protein.
 
 
 0.995
RPA3132
Putative diguanylate cyclase (GGDEF) with response regulator receiver domain.
       0.656
RPA3133
Response regulator receiver (CheY-like protein).
       0.651
RPA3824
Conserved hypothetical protein; InterPro IPR002106.
  
     0.548
RPA3162
Transcriptional regulator, XRE family.
 
   
 0.501
RPA3826
Conserved hypothetical protein; COGs COG3657.
 
     0.477
dinP
DNA damage inducible protein P; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
     
 0.463
RPA3134
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.458
RPA4135
GCN5-related N-acetyltransferase.
 
     0.430
RPA1688
GCN5-related N-acetyltransferase.
  
    0.414
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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