STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA3149Conserved hypothetical protein. (455 aa)    
Predicted Functional Partners:
RPA3680
Possible pilus assembly protein cpaE.
 
  
 0.872
RPA4081
Possible pilus assembly protein cpaB.
 
  
 0.851
RPA3677
Conserved hypothetical protein.
 
  
 0.823
RPA3682
Conserved unknown protein; COGs COG2064.
 
  
 0.819
RPA3683
Conserved hypothetical protein; COGs COG2064.
 
    0.814
RPA3674
Conserved hypothetical protein.
 
    0.808
RPA3678
Putative exporter protein, cpaC; Belongs to the bacterial secretin family.
 
  
 0.781
RPA0905
Flp/Fap pilin component.
 
  
 0.778
RPA3673
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.771
RPA3676
Putative type IV prepilin peptidase, cpaA.
 
  
 0.761
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: medium (66%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.