STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
RPA3172Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (282 aa)    
Predicted Functional Partners:
RPA3171
Conserved hypothetical protein; COGs COG1942; Belongs to the 4-oxalocrotonate tautomerase family.
 
   
 0.706
RPA3796
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.688
oxyR
Hydrogen peroxide-inducible transcriptional regulator OxyR, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.670
RPA0130
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.649
RPA4076
Transcriptional regulator, LysR family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the LysR transcriptional regulatory family.
  
     0.619
ligR
Transcriptional regulator ligR, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.614
RPA1769
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.610
RPA3738
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.571
RPA3387
Transcriptional regulator, LysR family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the LysR transcriptional regulatory family.
  
     0.538
RPA2642
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.524
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.