Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPA3176Hypothetical protein; InterPro IPR002591. (616 aa)    
Predicted Functional Partners:
RPA4226
Putative signal transduction histidine kinase with Chase domain.
  
     0.755
RPA0136
Methyl-accepting chemotaxis receptor/sensory transducer; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.754
RPA3266
Possible pyridine nucleotide-disulphide oxidored.
  
     0.747
RPA3206
Conserved hypothetical protein; InterPro IPR000104.
  
    0.740
RPA3958
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.718
RPA3187
Sensor histidine kinase with a PAS/PAC domain.
  
 
   0.706
fkbM
Possible methyltransferase, FkbM family.
  
     0.699
RPA1598
Peptidylprolyl isomerase, FKBP-type:Acyltransferase 3 family.
  
     0.692
RPA3502
Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.686
RPA3873
Hypothetical protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family.
  
     0.641
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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