Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA3178Hypothetical protein. (132 aa)    
Predicted Functional Partners:
RPA0923
Conserved hypothetical protein; InterPro IPR001104.
 
     0.760
RPA3179
Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
 
     0.701
RPA2571
Possible NADPH-dependent oxidoreductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.616
RPA2570
Conserved hypothetical protein; COGs COG3496.
 
     0.594
RPA3177
Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.590
RPA3198
Conserved hypothetical protein; InterPro IPR001104.
 
     0.534
ChrR
Sensor protein ChrR, cytochrome cycA regulator.
 
     0.428
RPA3180
Hypothetical protein.
  
    0.418
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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