Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phnBConserved hypothetical protein; COGs COG2764. (142 aa)    
Predicted Functional Partners:
RPA1112
DGPF domain.
    0.918
RPA4416
Conserved hypothetical protein.
 
  
 0.818
RPA1907
Putative protein.
  
    0.556
RPA3879
Conserved hypothetical protein.
  
    0.556
RPA3264
Bacterial regulatory protein, MarR family.
  
  
 0.546
cobB-2
Sir2 family, possible ADP ribosyltransferase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
  
    0.475
RPA3262
Putative transporter.
  
    0.470
RPA2404
Probable transcriptional regulator, AraC family.
 
    0.465
RPA3540
Putative cell filamentation protein.
   
  
 0.460
RPA1988
Probable transcriptional regulator, AraC family.
 
    0.455
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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