Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA3276Possible tonB protein. (282 aa)    
Predicted Functional Partners:
exbD
Putative exbD, uptake of enterochelin; tonB-dependent uptake of B colicins.
 
 
 0.924
exbB
Putative exbB, uptake of enterochelin; tonB-dependent uptake of B colicins.
 
 
 0.916
hasR
Possible heme receptor.
 
 
 0.908
pigA
Possible iron-starvation protein.
 
  
 0.801
RPA0156
tonB like protein.
  
     0.769
RPA1346
Possible TonB protein, possible colicin J receptor.
  
     0.761
RPA2124
tonB dependent iron siderophore receptor; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.751
exbD3
Biopolymer transport protein ExbD/TolR.
 
 
 0.684
exbD1
Biopolymer transport protein ExbD.
 
 
 0.669
exbD5
exbD, uptake of enterochelin; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.654
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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