Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
exbDPutative exbD, uptake of enterochelin; tonB-dependent uptake of B colicins. (149 aa)    
Predicted Functional Partners:
exbB
Putative exbB, uptake of enterochelin; tonB-dependent uptake of B colicins.
 
 
 0.995
TolQ
TolQ protein, inner membrane protein, tolerance to group A colicins; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.937
RPA3276
Possible tonB protein.
 
 
 0.924
exbB1
Putative biopolymer transport protein ExbB.
 
 
 0.901
exbB3
Putative exbB, uptake of enterochelin; tonB-dependent uptake of B colicins.
 
 
 0.901
exbB5
Possible exbB, uptake of enterochelin; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.901
RPA0154
Possible MotA/TolQ/ExbB proton channel family.
 
 
 0.834
pigA
Possible iron-starvation protein.
     
 0.824
RPA1346
Possible TonB protein, possible colicin J receptor.
 
 
 0.675
RPA2121
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.670
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
Server load: medium (42%) [HD]