STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
RPA3299Putative long-chain-fatty-acid CoA ligase. (518 aa)    
Predicted Functional Partners:
RPA3300
Possible transcriptional regulator, TetR family.
 
     0.811
mcyE
Possible McyE polykeitde synthase and peptide synthetase (AF183408).
 
0.805
RPA1234
Possible long-chain-fatty-acid--CoA ligase.
 
 
0.729
RPA1449
Putative long-chain fatty acid--CoA ligase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 
0.723
RPA4823
Putative long-chain-fatty-acid-CoA ligase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 
 
0.709
pimA
pimeloyl-CoA ligase.
  
  
 
0.700
RPA1766
Putative long-chain-fatty-acid-CoA ligase.
  
  
 
0.696
RPA0464
Putative long-chain fatty-acid-CoA ligase.
  
  
 
0.692
RPA4267
long-chain-fatty-acid-CoA-ligase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 
0.681
RPA4595
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.680
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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