Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPA3302Conserved hypothetical protein; COGs COG2030. (148 aa)    
Predicted Functional Partners:
RPA3303
MaoC-like dehydratase.
     0.990
RPA3301
Putative lipid transfer protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.910
fabG3
Putative 3-oxoacyl-acyl carrier protein reductase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.900
paaG2
enoyl-CoA hydratase/isomerase family; CTG start codon.
  
 0.762
RPA3300
Possible transcriptional regulator, TetR family.
 
     0.630
katE
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.628
RPA3299
Putative long-chain-fatty-acid CoA ligase.
     
 0.536
RPA3194
Conserved hypothetical protein; COGs COG0183.
 
 
 0.510
RPA1776
Possible lipid transfer protein.
 
 
 0.504
paaD
Putative phenylacetic acid degradation protein PaaD.
 
  
 0.502
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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