STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
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[Homology]
Score
nirK1Nitrite reductase, major outer membrane copper-containing protein; Belongs to the multicopper oxidase family. (368 aa)    
Predicted Functional Partners:
norB
Nitric-oxide reductase subunit B; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.969
norC
Nitric-oxide reductase subunit C.
 
 
 0.957
nirA
Possible ferredoxin-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
     
 0.950
nirK2
Dissimilatory nitrite reductase; Belongs to the multicopper oxidase family.
  
  
0.901
RPA1369
Conserved hypothetical protein; InterPro IPR004136 COGs COG2070.
     
  0.900
RPA3112
2-nitropropane dioxygenase.
     
  0.900
RPA3656
Conserved hypothetical protein; COGs COG2070.
     
  0.900
RPA4708
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
     
  0.900
RPA4146
DUF323.
 
     0.782
nnrR
Putative nitric oxide responsive transcriptional regulator NnrR, Crp/Fnr family.
 
   
 0.778
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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