Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA3340Peptide synthetase (fragment). (637 aa)    
Predicted Functional Partners:
RPA3338
Possible Condensation domain, peptide synthetase.
  
 0.995
RPA1003
Putative acyl-CoA synthase.
  
0.941
RPA3336
Possible lipopeptide antibiotics iturin a biosynthesis protein; Belongs to the P-Pant transferase superfamily.
 
 
 0.941
RPA1412
Putative fatty-acid--CoA ligase.
  
0.939
RPA2146
Putative long-chain-fatty-acid--CoA ligase.
  
0.938
RPA1763
Putative long-chain-fatty-acid CoA ligase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
0.936
RPA0464
Putative long-chain fatty-acid-CoA ligase.
  
0.931
aliA
cyclohexanecarboxylate-CoA ligase.
  
0.929
RPA4267
long-chain-fatty-acid-CoA-ligase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
0.923
badH
2-hydroxycyclohexanecarboxyl-CoA dehydrogenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.912
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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