STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA3359O-antigen polymerase. (477 aa)    
Predicted Functional Partners:
RPA2750
Probable glycosyl transferase.
  
  
 0.903
pssN
Putative capsule polysaccharide export outer membrane protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.899
RPA3355
Putative exopolysaccharide polymerization protein.
 
  
 0.824
RPA4585
Lipopolysaccharide biosynthesis.
 
  
 0.805
RPA2752
Possible succinoglycan biosynthesis transport protein exoP.
 
  
 0.695
manC,
Putative mannose-1-phosphate guanylyltransferase (GDP) (GDP-mannose pyrophosphorylase) (GMP); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.676
RPA4833
Possible polysaccharide export protein.
 
  
 0.617
RPA2923
Conserved hypothetical protein; InterPro IPR000694.
 
    0.580
RPA3357
Putative glycosyltransferase.
  
  
 0.540
RPA3983
Putative nucleotide sugar epimerase/dehydratase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.536
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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