Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
RPA0440 | RPA1144 | Conserved hypothetical protein. | Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.657 |
RPA0440 | RPA1180 | Conserved hypothetical protein. | Putative cylclic diguanylate phosphodiesterase (EAL). | 0.752 |
RPA0440 | RPA1266 | Conserved hypothetical protein. | Possible FlbE protein. | 0.768 |
RPA0440 | RPA3168 | Conserved hypothetical protein. | Possible flgaellar switch protein FliN. | 0.767 |
RPA0440 | RPA3380 | Conserved hypothetical protein. | Response regulator receiver (CheY-like protein). | 0.683 |
RPA0440 | RPA3381 | Conserved hypothetical protein. | Hpt domain. | 0.770 |
RPA0440 | RPA3891 | Conserved hypothetical protein. | Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.775 |
RPA0440 | RPA3908 | Conserved hypothetical protein. | Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.773 |
RPA1144 | RPA0440 | Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Conserved hypothetical protein. | 0.657 |
RPA1144 | RPA1180 | Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Putative cylclic diguanylate phosphodiesterase (EAL). | 0.530 |
RPA1144 | RPA1266 | Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Possible FlbE protein. | 0.862 |
RPA1144 | RPA1817 | Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Conserved hypothetical protein. | 0.686 |
RPA1144 | RPA3168 | Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Possible flgaellar switch protein FliN. | 0.698 |
RPA1144 | RPA3380 | Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Response regulator receiver (CheY-like protein). | 0.658 |
RPA1144 | RPA3381 | Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Hpt domain. | 0.836 |
RPA1144 | RPA3891 | Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.778 |
RPA1144 | RPA3908 | Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.750 |
RPA1144 | RPA4417 | Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | Sensor histidine kinase with PAS/PAC and response regulator receiver domains. | 0.684 |
RPA1180 | RPA0440 | Putative cylclic diguanylate phosphodiesterase (EAL). | Conserved hypothetical protein. | 0.752 |
RPA1180 | RPA1144 | Putative cylclic diguanylate phosphodiesterase (EAL). | Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. | 0.530 |
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