STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA3387Transcriptional regulator, LysR family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the LysR transcriptional regulatory family. (338 aa)    
Predicted Functional Partners:
RPA3386
Possible amidohydrolase.
  
    0.779
RPA4151
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.731
RPA2222
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.723
RPA2676
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.717
RPA0130
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.703
RPA3738
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.693
RPA3796
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.685
oxyR
Hydrogen peroxide-inducible transcriptional regulator OxyR, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.656
RPA3384
Possible ABC related periplasmic binding protein.
 
  
 0.650
RPA4283
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.624
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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