Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA3398Possible arsenite permease. (421 aa)    
Predicted Functional Partners:
arsC1
Arsenate reductase pump modifier; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
     
 0.781
arsR3
Transcriptional regulator, ArsR family, ArsR3.
  
  
 0.554
cspA4
Cold shock DNA binding protein.
  
    0.480
RPA3396
Hypothetical protein.
       0.475
RPA3397
Hypothetical protein.
       0.475
lysC
Putative aspartokinase, alpha and beta subunits; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the aspartokinase family.
     
 0.463
RPA4662
Putative suar transport protein.
 
     0.420
RPA0811
Putative manganese transp.
  
   
 0.408
RPS6
Possible 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. Belongs to the bacterial ribosomal protein bS6 family.
   
    0.401
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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