STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cspA4Cold shock DNA binding protein. (75 aa)    
Predicted Functional Partners:
cspA2
Cold shock DNA binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.768
mucR
Putative transcriptional regulator MucR; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
  
 0.715
vanA
Putative vanillate O-demethylase oxygenase, iron-sulfur subunit.
   
  
 0.636
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.547
RPA3400
Hypothetical protein.
  
    0.539
rpmE
Possible 50S ribosomal protein L31; Binds the 23S rRNA.
  
 
 0.522
rpmJ,
50S ribosomal protein L36; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 
 0.494
RPA3398
Possible arsenite permease.
  
    0.480
rplO
50S ribosomal protein L15; Binds to the 23S rRNA.
   
   0.470
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.
   
 
 0.456
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.