Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA3407Hypothetical protein. (192 aa)    
Predicted Functional Partners:
flgI
Flagellar P-ring protein FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.545
RPA3888
Possible flagellar basal-body rod protein FlgB.
   
    0.472
flgD
Possible basal-body rod modification protein flgD; Required for flagellar hook formation. May act as a scaffolding protein.
   
    0.458
RPA1304
Possible flagellar basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
   
    0.458
flgC
Flagellar basal-body rod protein flgC; Belongs to the flagella basal body rod proteins family.
   
    0.444
flgE
Possible flagellar hook protein FlgE.
   
    0.410
RPA1652
Possible flagellar basal-body rod protein FlgG.
   
    0.410
RPA3932
Probable flagellar hook protein flgE; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
    0.410
RPA0097
Putative flagellar basal-body rod protein flgC; Belongs to the flagella basal body rod proteins family.
   
    0.407
flgG
Putative flagellar basal-body rod protein flgg (distal rod protein); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the flagella basal body rod proteins family.
   
    0.402
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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