Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA3433Possible salicylate hydroxylase. (397 aa)    
Predicted Functional Partners:
RPA3432
Conserved hypothetical protein.
 
    0.885
phbH
4-hydroxybenzoate hydroxylase (4-hydroxybenzoate-3-monooxygenase).
 
   
 0.813
RPA4675
Possible 3-(3-hydroxy-phenyl)propionate hydroxylase.
  
   
 0.779
RPA1024
Putative oxidoreductase.
   
    0.655
RPA2785
Possible flavodoxin oxidoreductase.
   
    0.655
RPA3430
Possible hydrolase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.582
ubiB
Ubiquinone biosynthesis protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 0.539
RPA1009
Possible cytochrome P450; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the cytochrome P450 family.
 
 
 0.536
RPA3431
Hypothetical protein.
       0.535
RPA3778
Putative cytochrome p450-like enzyme.
 
 
 0.534
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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