Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA3442Putative cyclase. (258 aa)    
Predicted Functional Partners:
RPA3443
Possible isomerase/decarboxylase.
    0.871
RPA2141
Conserved hypothetical protein; COGs COG3246.
 
  
 0.867
RPA1299
Conserved hypothetical protein.
  
    0.794
RPA3588
Possible FAD-dependent monooxygenase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.556
RPA0935
Conserved hypothetical protein; InterPro IPR000379 COGs COG1073.
 
   
 0.527
RPA3444
Transcriptional regulator, GntR family.
       0.502
trpG
Putative lemA protein; Authentic frameshift, lemA pseudogene.
     
 0.449
mcyE
Possible McyE polykeitde synthase and peptide synthetase (AF183408).
     
 0.404
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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