Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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RPA3458Possible TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (386 aa)    
Predicted Functional Partners:
RPA3459
Possible TrapT family, fused dctM-Q subunits, C4-dicarboxylate transport.
 
 
 0.995
RPA4509
Possible TrapT family, fused dctQ-M subunits, C4-dicarboxylate transport.
 
  
 0.730
RPA4556
Possible TrapT family, dctP subunit, C4-dicarboxylate periplasmic binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
   
 0.641
RPA4555
Possible TrapT family, dctQ subunit, C4-dicarboxylate transport.
  
     0.614
RPA3457
Possible transcriptional regulator; Frameshift.
 
     0.517
RPA1881
Hypothetical protein; COGs COG2358.
  
     0.497
RPA4034
ABC transporter, periplasmic branched chain amino acid binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.480
RPA3460
Hypothetical protein.
       0.461
RPA1030
Possible CoA transferase, subunit B; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.459
RPA4652
Possible CoA transferase, subunit B.
 
     0.446
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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