STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA3469Probable permease protein of sugar ABC transporter. (317 aa)    
Predicted Functional Partners:
RPA3468
Putative permease protein of sugar ABC transporter.
 
 0.992
RPA1397
Putative sugar ABC transporter, permease protein.
 
 0.946
RPA0127
Putative permease protein of sugar ABC transporter.
 
 0.942
RPA3470
Putative sugar uptake ABC transporter periplasmic solute-binding protein precursor; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.942
RPA3471
ABC transporter, ATP-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the ABC transporter superfamily.
 
 
 0.936
ugpC
ATP-binding component of sn-glycerol 3-phosphate transport system; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
 
 
 0.905
RPA0129
Putative sugar binding protein of ABC transporter; Belongs to the ABC transporter superfamily.
 
 
 0.903
ugpE
Sn-glycerol 3-phosphate transport system, integral membrane protein; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 0.900
RPA1399
Putative transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.895
RPA1398
Putative sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.891
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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