STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbB5Possible exbB, uptake of enterochelin; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (234 aa)    
Predicted Functional Partners:
exbD5
exbD, uptake of enterochelin; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.981
exbD3
Biopolymer transport protein ExbD/TolR.
 
 
 0.906
exbD1
Biopolymer transport protein ExbD.
 
 
 0.904
RPA0155
Putative tolR/exbD protein.
 
 
 0.900
TolR
Putative tolR protein, uptake of enterochelin; tonB-dependent uptake of B colicins.
 
 
 0.899
exbD
Putative exbD, uptake of enterochelin; tonB-dependent uptake of B colicins.
 
 
 0.899
exbD2
Transport protein ExbD.
 
 
 0.851
RPA3476
Possible energy transducer TonB; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.839
fiu
Putative outer membrane receptor for iron transport; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.690
RPA3479
2OG-Fe(II) oxygenase superfamily:Prolyl 4-hydroxylase, alpha subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
  
 0.674
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.