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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA3483RND efflux transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1045 aa)    
Predicted Functional Partners:
RPA3482
Putative membrane protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.963
RPA2573
Possible membrane protein, permease; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.848
secF
Putative protein-export membrane protein secF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
  
  
 0.753
secD
Protein-export membrane protein secD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
  
   
 0.696
secG
Possible secG: preprotein translocase; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
 
 0.668
ragD
Possible cation/heavy metal efflux pump, HlyD family secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.633
arsC2
Arsenate reductase.
      
 0.625
RPA3776
Possible RND efflux membrane fusion protein precursor; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.590
mex
Possible RND efflux membrane fusion protein precursor; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.580
mexE
Pseudogene of RND multidrug efflux transporter MexF; Signal predicted by SignalP 2.0 HMM (Signal peptideprobabilty 0.820) with cleavage site probability 0.388 atresidue 29; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.548
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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