STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA3540Putative cell filamentation protein. (189 aa)    
Predicted Functional Partners:
RPA3541
Hypothetical protein.
       0.773
emrB1
Putative multidrug resistance protein B (drug efflux transporter); Belongs to the major facilitator superfamily.
  
    0.623
otsB
Putative trehalose-6-phosphate phophatase, biosynthetic; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.525
phnB
Conserved hypothetical protein; COGs COG2764.
   
  
 0.460
RPA3162
Transcriptional regulator, XRE family.
 
    0.436
RPA0902
Glyoxalase/Bleomycin resistance protein/dioxygenase domain.
   
  
 0.430
yafB
Putative aldose reductase.
   
    0.407
RPA4297
Putative aldose reductase.
   
    0.407
RPA2150
Putative oxidoreductase.
   
    0.402
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.