Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA3558Possible permease. (349 aa)    
Predicted Functional Partners:
RPA3557
Thiol-disulfide isomerase and thioredoxins.
 
  
 0.964
arsR3
Transcriptional regulator, ArsR family, ArsR3.
 
  
 0.935
arsC3
Arsenate reductase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
  
 0.696
arsC2
Arsenate reductase.
  
  
 0.664
arsR2
Transcriptional regulator, ArsR family, ArsR2.
  
  
 0.663
RPA3553
Arsenite efflux pump ACR3.
  
  
 0.564
RPA3560
DUF81.
  
    0.536
RPA2964
Multicopper oxidase, type 1.
  
  
 0.523
nirK1
Nitrite reductase, major outer membrane copper-containing protein; Belongs to the multicopper oxidase family.
  
  
 0.523
nirK2
Dissimilatory nitrite reductase; Belongs to the multicopper oxidase family.
  
  
 0.523
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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