Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RPA3593Collagen triple helix repeat:Antifreeze protein, type I; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (212 aa)    
Predicted Functional Partners:
RPA2858
Hypothetical protein; InterPro IPR006202.
  
    0.640
RPA3592
Hypothetical protein.
       0.518
RPA2844
Pseudo gene of Fe+3 siderophore transport receptor; Signal predicted by SignalP 2.0 HMM (Signal peptideprobabilty 0.994) with cleavage site probability 0.874 atresidue 31.
  
    0.490
RPA4208
SCP-like extracellular protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.490
RPA1895
Possible peptidase.
  
     0.461
atpE
Probable ATP synthase subunit C TRANSMEMBRANE protein; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
   
 0.408
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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