Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Experiments
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[Homology]
Score
RPA3596Hypothetical protein; InterPro IPR006311. (401 aa)    
Predicted Functional Partners:
RPA3597
Conserved hypothetical protein.
    0.982
RPA3598
Methyl-accepting chemotaxis receptor/sensory transducer; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.518
RPA4217
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the UPF0337 (CsbD) family.
   
    0.495
RPA0184
Hypothetical protein.
  
     0.430
RPA3029
Conserved hypothetical protein.
   
    0.427
RPA3505
Conserved hypothetical protein.
   
    0.427
phnB
Conserved hypothetical protein; COGs COG2764.
   
    0.413
RPA4418
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the UPF0337 (CsbD) family.
   
    0.411
glmS
Glucosamine-fructose-6-phosphate aminotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
    0.402
RPA3627
Putative glutathione peroxidase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the glutathione peroxidase family.
  
    0.400
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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