Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
ureFPossible urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. (311 aa)    
Predicted Functional Partners:
ureD
Possible urease accessory protein D; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 
 0.996
ureC
Urease alpha subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
 
 
 0.995
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
 0.993
ureB
Urease beta subunit; Belongs to the urease beta subunit family.
 
 
 0.991
ureA
Urease gamma subunit; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the urease gamma subunit family.
 
 
 0.974
hypB
Hydrogenase expression/formation protein hypB.
  
 
 0.772
RPA3666
Possible ATP-binding component of ABC transporter.
 
  
 0.587
RPA1390
Conserved hypothetical protein; InterPro IPR001687 COGs COG0378.
  
 
 0.583
hupE
Putative membrane-bound hydrogenase component hupE.
 
  
 0.523
RPA3665
Possible ATP-binding component of ABC transporter.
 
   
 0.506
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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