cspA5 protein (Rhodopseudomonas palustris CGA009)

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cspA5

Cold shock DNA binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (84 aa)

Predicted Functional Partners:

mucR

0.741

RPA3670

0.666

rpsQ

0.609

infA

0.605

rpsL

0.575

rpsS

0.567

rplW

0.554

rpmC

0.553

rplO

0.544

rplA

0.539

Your Current Organism:

Rhodopseudomonas palustris CGA009

NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPA3670	cspA5	RPA3670	RPA3672	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	Cold shock DNA binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.666
RPA3670	infA	RPA3670	RPA3671	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	Translation initiation factor if-1 (infA); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.885
RPA3670	rplA	RPA3670	RPA3272	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. Belongs to the universal ribosomal protein uL1 family.	0.692
RPA3670	rplO	RPA3670	RPA3231	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	50S ribosomal protein L15; Binds to the 23S rRNA.	0.631
RPA3670	rplW	RPA3670	RPA3248	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.	0.718
RPA3670	rpmC	RPA3670	RPA3242	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	50S ribosomal protein L29; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.464
RPA3670	rpsL	RPA3670	RPA3255	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.525
RPA3670	rpsQ	RPA3670	RPA3241	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.527
cspA5	RPA3670	RPA3672	RPA3670	Cold shock DNA binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.666
cspA5	infA	RPA3672	RPA3671	Cold shock DNA binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Translation initiation factor if-1 (infA); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.605
cspA5	mucR	RPA3672	RPA1852	Cold shock DNA binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	Putative transcriptional regulator MucR; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.741
cspA5	rplA	RPA3672	RPA3272	Cold shock DNA binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. Belongs to the universal ribosomal protein uL1 family.	0.539
cspA5	rplO	RPA3672	RPA3231	Cold shock DNA binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	50S ribosomal protein L15; Binds to the 23S rRNA.	0.544
cspA5	rplW	RPA3672	RPA3248	Cold shock DNA binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.	0.554
cspA5	rpmC	RPA3672	RPA3242	Cold shock DNA binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	50S ribosomal protein L29; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.553
cspA5	rpsL	RPA3672	RPA3255	Cold shock DNA binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.575
cspA5	rpsQ	RPA3672	RPA3241	Cold shock DNA binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.609
cspA5	rpsS	RPA3672	RPA3246	Cold shock DNA binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.567
infA	RPA3670	RPA3671	RPA3670	Translation initiation factor if-1 (infA); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	Putative ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.885
infA	cspA5	RPA3671	RPA3672	Translation initiation factor if-1 (infA); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	Cold shock DNA binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.	0.605

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