Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPA3673Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (208 aa)    
Predicted Functional Partners:
RPA3674
Conserved hypothetical protein.
 
     0.948
RPA3680
Possible pilus assembly protein cpaE.
 
  
 0.901
RPA3677
Conserved hypothetical protein.
 
  
 0.875
RPA3683
Conserved hypothetical protein; COGs COG2064.
 
    0.846
RPA3675
Flp/Fap pilin component.
 
  
 0.842
RPA3682
Conserved unknown protein; COGs COG2064.
 
  
 0.836
RPA3676
Putative type IV prepilin peptidase, cpaA.
 
  
 0.834
RPA4081
Possible pilus assembly protein cpaB.
 
  
 0.831
RPA0729
Conserved hypothetical protein.
 
     0.798
RPA3149
Conserved hypothetical protein.
 
   
 0.780
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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