STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA3680Possible pilus assembly protein cpaE. (423 aa)    
Predicted Functional Partners:
RPA3682
Conserved unknown protein; COGs COG2064.
 
  
 0.992
RPA3677
Conserved hypothetical protein.
 
  
 0.990
RPA3683
Conserved hypothetical protein; COGs COG2064.
 
  
 0.989
RPA3678
Putative exporter protein, cpaC; Belongs to the bacterial secretin family.
 
  
 0.987
RPA3679
Possible pilus assembly protein cpaD; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.972
RPA4081
Possible pilus assembly protein cpaB.
 
  
 0.971
RPA3681
Secretory protein kinase, cpaF.
 
  
 0.968
RPA0729
Conserved hypothetical protein.
 
  
 0.959
RPA3674
Conserved hypothetical protein.
 
  
 0.959
RPA3676
Putative type IV prepilin peptidase, cpaA.
 
  
 0.957
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.