Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA3683Conserved hypothetical protein; COGs COG2064. (324 aa)    
Predicted Functional Partners:
RPA3682
Conserved unknown protein; COGs COG2064.
 
 
 0.999
RPA3680
Possible pilus assembly protein cpaE.
 
 
 0.998
RPA3681
Secretory protein kinase, cpaF.
 
 
 0.997
RPA3678
Putative exporter protein, cpaC; Belongs to the bacterial secretin family.
 
 
 0.996
RPA4081
Possible pilus assembly protein cpaB.
 
 
 0.995
RPA3677
Conserved hypothetical protein.
 
  
 0.972
RPA3679
Possible pilus assembly protein cpaD; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
   
 0.915
RPA3675
Flp/Fap pilin component.
 
  
 0.891
RPA4113
Putative conjugal transfer protein trbB.
 
  
 0.874
trbB2
Conjugal transfer protein trbB.
 
  
 0.871
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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