Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPA3690Peptide ABC transporter, permease protein. (369 aa)    
Predicted Functional Partners:
RPA3689
Peptide ABC transporter, permease protein.
 
  
 0.984
RPA3688
Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.975
RPA3691
Putative ABC transporter, solute-binding protein.
  
 0.975
RPA3692
Putative peptide ABC transporter, periplasmic peptide-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 0.970
RPA3687
Putative MutT/ADP-ribose pyrophosphatase.
 
     0.845
RPA2666
Possible binding protein component of ABC transporter.
  
 0.843
RPA2330
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     0.656
RPA2643
Putative ABC transporter ATP-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the ABC transporter superfamily.
 
     0.647
RPA3693
Putative cytochrome c; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.589
RPA1214
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     0.561
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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