Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RPA3699Possible iron-chelator utilization protein. (242 aa)    
Predicted Functional Partners:
RPA1015
Transcriptional regulator, PadR family.
   
 0.753
emrB2
Putative drug efflux pump, Major Facilitator Superfamily (MFS).
     
 0.732
emrA
Putative multidrug resistance protein.
       0.727
trpG
Putative lemA protein; Authentic frameshift, lemA pseudogene.
  
  
 0.629
RPA3338
Possible Condensation domain, peptide synthetase.
  
  
 0.609
mcyE
Possible McyE polykeitde synthase and peptide synthetase (AF183408).
  
  
 0.597
RPA3696
Transcriptional regulator, TetR family.
 
   
 0.575
RPA2120
Putative hemin binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
    0.514
RPA2385
Putative ABC transporter, periplasmic Fe+3 siderophore binding protein.
 
  
 0.486
RPA2383
Putative iron(III) ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.446
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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