Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
RPA3738Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (296 aa)    
Predicted Functional Partners:
RPA1721
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.730
RPA1562
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.712
RPA4747
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.707
RPA3387
Transcriptional regulator, LysR family; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the LysR transcriptional regulatory family.
  
     0.693
RPA2222
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.653
RPA2676
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.652
RPA3796
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.644
RPA0130
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.643
RPA4114
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.625
ligR
Transcriptional regulator ligR, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.594
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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